Stem Trace: an interactive visual tool for comparative RNA structure analysis
نویسندگان
چکیده
منابع مشابه
Stem Trace: an interactive visual tool for comparative RNA structure analysis
MOTIVATION Stem Trace is one of the latest tools available in STRUCTURELAB, an RNA structure analysis computer workbench. The paradigm used in STRUCTURELAB views RNA structure determination as a problem of dealing with a database of a large number of computationally generated structures. Stem Trace provides the capability to analyze this data set in a novel, visually driven, interactive and exp...
متن کاملMANIP: an interactive tool for modelling RNA.
Large RNA structures can be viewed as assemblies of smaller units or modules that are usually clearly identified (helices, hairpin loops, other recurrent motifs, etc.). We have developed a program, MANIP, which allows the rapid assembly of separate motifs (each with a specified sequence) into a complex three-dimensional architecture. The already determined modules are present in a database from...
متن کاملModeRNA: a tool for comparative modeling of RNA 3D structure
RNA is a large group of functionally important biomacromolecules. In striking analogy to proteins, the function of RNA depends on its structure and dynamics, which in turn is encoded in the linear sequence. However, while there are numerous methods for computational prediction of protein three-dimensional (3D) structure from sequence, with comparative modeling being the most reliable approach, ...
متن کاملVIT-PLA: Visual Interactive Tool for Process Log Analysis
Techniques for analyzing and visualizing process or workflow data have been developed and applied in a wide range of domains. Visual analysis of large process logs and integration of statistical analysis, however, have been limited. We introduce the Visual Interactive Tool for Process Log Analysis (VIT-PLA) that provides a simplified process log visualization and performs statistical correlatio...
متن کاملInVis: A Tool for Interactive Visual Data Analysis
We present InVis, a tool to visually analyse data by interactively shaping a two dimensional embedding of it. Traditionally, embedding techniques focus on finding one fixed embedding, which emphasizes a single aspects of the data. In contrast, our application enables the user to explore the structures of a dataset by observing and controlling a projection of it. Ultimately it provides a way to ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 1999
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/15.1.16